oxo-flow profile

Manage execution profiles (local, SLURM, PBS, SGE, LSF).

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Usage

oxo-flow profile <ACTION> [NAME]

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Actions

Action	Description
list	List available execution profiles
show	Show details of a specific profile
current	Show the current active profile

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Arguments

Argument	Description
<NAME>	Profile name (e.g., local, slurm, pbs, sge, lsf)

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Examples

List all profiles

oxo-flow profile list

Show SLURM profile details

oxo-flow profile show slurm

Show current active profile

oxo-flow profile current

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Output

oxo-flow 0.6.1 — Bioinformatics Pipeline Engine
Available execution profiles:
  • local — Local execution (default)
  • slurm — SLURM cluster scheduler
  • pbs   — PBS/Torque cluster scheduler
  • sge   — Sun Grid Engine (SGE) scheduler
  • lsf   — IBM LSF scheduler

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Notes

• Profiles define how jobs are submitted and monitored across different computing environments
• The local profile is used by default if no other profile is specified
• Profile configurations can be customized in global or project-level settings